Resources

1. Low-grade glioma GWAS SNPs
   
   
   
   
   
   • The latest version of the GWAS Catalog is available on the EBI website.
2. WashU Epigenome Browser





• We use the WashU Epigenome Browser interface for showing data of different types.
• The source code for building the interface using Javascript and CSS can be found here.
3. TCGA data
   
   
   
   
   • Gene expression quantification data in RNA-Seq by Expectation-Maximization (RSEM) units and copy number segmentation data were downloaded from the GDC data portal Legacy Archive.
   • RNA-seq aligned reads and patient cohort genotypes were also obtained from the GDC Data Portal after receiving permission to access controlled data.
4. ENCODE data
   
   
   
   
   • ChIP-seq narrowPeak and broadPeak files were downloaded (April 2018 update) from the ENCODE portal.
5. Motif databases
   • The following motif databases are included in the motif analysis: JASPAR2016, TRANSFAC, HOCOMOCOv10 and Jolma.